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Molecular Spectroscopy & Centre for Biospectroscopy
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Research programs Staff High Resolution IR Laser Spectroscopy & Computational Chem.
 

Publications

Refereed and Book Publications in Biospectroscopy 2001 - present

  • A comparison of methods for detection of nutrient limitation in microalgae. Beardall, J., Berman, T., Heraud, P.,  Kadiri, M., Light, B., Patterson, G., Roberts, S., Sahan E., Schulzberger B., Urlinger, U, and Wood, B. Aquatic Science 63 (1), 107-121. (2001)
  • Micro-Raman characterization of the R to T state transition of haemoglobin within a single living erythrocyte Bayden R. Wood, Brian Tait & Donald McNaughton Biochimica et Biophysica Acta, 14748 1-13 (2001)
  • FTIR Spectroscopy as a novel tool to investigate changes in intracellular macromolecular pools in marine microalga, Chaetoceros muellerii M Giordano, M Kansiz, P Heraud, J Beardall, B Wood and D McNaughton  J. Phycol. 37 (2) 271-279  (2001)
  • Mid-Infrared Spectroscopy Coupled to Sequential Injection Analysis (SIA) for the On-line Monitoring of an Acetone-Butanol-Ethanol (ABE) Fermentation M Kansiz, K. C Schuster, J R. Gapes D McNaughton and B Lendl Analytica Chimica Acta, 438, 175-186 (2001)
  • Comment on “Structural and Vibrational Assignment of p-methoxyphenyl -ethylamine Conformers” E.G. Robertson, J.P. Simons, M. Mons, J. Phys. Chem. A, 105, 9990-9992 (2001)
  • “IR-UV ion-depletion and fluorescence spectroscopy of 2-phenylacetamide clusters: hydration of a primary amide” E.G. Robertson, M. R. Hockridge, P.D. Jelfs, J.P. Simons, Phys. Chem. Chem. Phys., 3, 786-795 (2001).
  • High resolution electronic spectroscopy of 4-phenylimidazole. M.R. Hockridge, E.G. Robertson, J.P. Simons, D.R. Borst, T.M. Korter, D.W. Pratt, Chem. Phys. Lett., 334, 31-38 (2001)
  • Energetics of the gas phase hydrates of trans-formanilide: a microscopic approach to the hydration sites of the peptide bond. M. Mons, I. Dimicoli, B. Tardivel, F. Piuzzi, E.G. Robertson, J.P. Simons, J. Phys. Chem. A, 105, 969-973 (2001)
  • Conformational preferences of neurotransmitters: norephedrine and the adrenaline analogue, 2-methylamino-1-phenylethanol. P. Butz, R.T. Kroemer, N.A. Macleod, E.G. Robertson, J.P. Simons, J. Phys. Chem. A, 105, 1050-1056 (2001)
  • Getting into shape: Conformational and supramolecular landscapes in small biomolecules and their hydrated clusters. E.G. Robertson, J.P. Simons, Phys. Chem. Chem. Phys, 3, 1-18 (2001)
  • Don McNaughton, The Identification of Drugs by infrared and Raman Spectroscopy: An APCELL experiment. Aust J. Ed. Chem, 60, 5-8 (2002)
  • B. Giese and D. McNaughton, Density Functional Theoretical (DFT) and Surface-Enhanced Raman spectroscopic Study of Guanine and its Alkylated Derivatives. Part 2: Surface-Enhanced Raman scattering on Silver Surfaces Phys. Chem. Chem. Phys, 4, 5171 - 5182 (2002)
  • B. Giese and D. McNaughton,  Density Functional Theoretical (DFT) and Surface-Enhanced Raman spectroscopic Study of Guanine and its Alkylated Derivatives. Part 1: DFT Calculations on neutral, Protonated and Deprotonated Guanine Phys. Chem. Chem. Phys, 4, 5161 - 5170, (2002)
  • Bayden R. Wood and Don McNaughton, Raman excitation wavelength investigation of single red blood cells in vivo, J. Raman Spec. 33, 517 – 523 (2002)
  • M. J. Romeo, M A. Quinn, F R. Burden and D McNaughton An Investigation into the Influence of Benign Cellular Changes in the Diagnosis of Cervical Cancer using FTIR Micro-spectroscopy and Principal Components Analysis.: Biopolymers - Biospectroscopy  67, 362-366 (2002)
  • B. R. Wood, B. Tait and D. McNaughton Micro-Raman characterisation of high and low spin haem moieties within a single living red blood cell  Biopolymers - Biospectroscopy  67, 259-262 (2002)
  • B. Giese, J. K. Jaworski, G.B. Deacon and D. McNaughton, The interaction of Novel Platinum Drugs with guanuine and S-containing Amino Acids: A combined DFT and SERS approach Biopolymers - Biospectroscopy  67, 294-297 (2002)
  • Observing the Cyclical Changes in Cervical Epithelium using Infrared Microspectroscopy M J Romeo, B R Wood and D McNaughton  Vibrational Spectroscopy, 28, 167-175 (2002)
  • Density Functional Theory and Surface-Enhanced Raman Spectroscopic Study of Uracil. The Influence of  the Surface Substrate, Surface Potential, and pH..  J. Phys. Chem. B, 106 (6), 1461 -1470, 2002. B. Giese and D. McNaughton
  • Surface Enhanced Raman Spectroscopic and Density Functional Theory Study of Adenine Adsorption to Silver Surfaces, B. Giese and D. McNaughton , B. Giese and D. McNaughton. J. Phys. Chem. B, 106, 101-112 (2002)
  • D Burns, H G. M. Edwards, T Hancewicz, M Jackson, E. N Lewis, M Manfait, He H.Mantsch, D McNaughton, B Wilson and J Hall, Preface to Vol 28 Vibrational Spectroscopy (2002)
  • D. McNaughton, "Instrumentation and methods for high resolution spectroscopy", in Handbook of Vibrational Spectroscopy, J.M. Chalmers and P.R. Griffiths (Eds), John Wiley & Sons, Ltd, Volume 1, pp. 165 – 175 (2002)
  • Conformational Analysis by Laser Spectroscopy in the Gas Phase: p-Methoxyphenethylamine (a Neurotransmitter). J. T. Yi, D. W. Pratt, E.G. Robertson, Phys. Chem. Chem. Phys., 4, 5244-5248 (2002).
  • High resolution electronic spectroscopy of three n-alkylbenzenes. Ethyl-, propyl- and butylbenzene  D.R. Borst, P.W. Joireman, D.W. Pratt, E.G. Robertson, J.P. Simons, J. Chem. Phys., 116, 7057-7064 (2002).
  • Melissa J. Romeo, Bayden R. Wood, Michael A. Quinn and Don McNaughton The removal of blood components from cervical smears: Implications for Cancer Diagnosis using FTIR Spec, Biopolymers: Biospectroscopy 72, 69-76 (2003).
  • The Interaction of the Anti-Cancer Drug Cisplatin with Guanine: A Density Functional Theoretical and Surface-Enhanced Raman Spectroscopic Study B. Giese and D. McNaughton, Biopolymers (Biospectroscopy) 72 (6) 472-489 (2003)
  • Raman in vivo imaging of haemozoin within the digestive vacuole of a single Plasmodium falciparum trophozoite Bayden R. Wood, Stephen Langford, Brian Cooke, Fiona Glenister, Janelle Lim, and Don McNaughton FEBS Letters  (2003),  554(3),  247-252.
  • Macleod, Neil A.; Robertson, Evan G.; Simons, John P.  Hydration of neurotransmitters: a computational and spectroscopic study of a noradrenaline analogue, 2-amino-1-phenyl-ethanol.    Molecular Physics  101(14),  2199-2210. (2003).
  • Fourier Transform Infrared Imaging and Unsupervised Hierarchical Clustering applied to cervical Biopsies, Keith R. Bambery, Bayden R. WoodA Michael A. Quinn and Don McNaughton Aust J. Chem 57(12), 1139-1143 (2004)
  • Resonance Raman Spectroscopy Reveals New Insight into the Electronic Structure of -Hematin and Malaria pigment, Bayden R. Wood, Steven J. Langford, Brian M. Cooke, Janelle Lim, Fiona K. Glenister, Martin Duriska, Jessica K. Unthank, and Don McNaughton , J. Am. Chem. Soc.; 126(30); 9233-9239 (2004)
  • FTIR mapping of the cervical transformation zone, squamous and glandular epithelium: Search for the elusive infrared cancer markers. B. R. Wood, L. Chiriboga, H. Yee, M. A. Quinn, D. McNaughton, and M. Diem, Gynecologic oncology  93(1), 59-68 (2004)
  • Raman Spectroscopy and Imaging of Hemes in Healthy and Diseased Live Red Blood Cells, D. McNaughton and B.R. Wood, Proceedings of the 19th International Conference on Raman Spectroscopy, Ed. P.M. Fredericks, R. Frost, L. Rintoull ,ISBN 0 643 09122 X, CSIRO publishing  p. 42-47  (2004).
  • Sequential Injection/mid Infrared spectroscopic analysis of an acetone-butanal-ethanol fermentation: Analyte: cross correlation effects. Mustafa Kansiz, K. Christian Schuster, Don McNaughton and Bernhard Lendl –Spectroscopy Letters , 38, 677-702 (2005)
  • P. Heraud, B.R. Wood, M. Tobin, J. Beardall and D. McNaughton" Mapping of nutrient-induced biochemical changes in living algal cells using synchrotron infrared microspectroscopy" FEMS Microbiology Letters 249, 219-225 (2005)
  • Bayden R. Wood, Philip Heraud, Slobodanka Stojkovic, Danielle Morrison, John Beardall and Don McNaughton, A portable Raman acoustic levitation spectroscopic system for the identification and environmental monitoring of algae cells Anal Chem, 77(15),  4955-4961 (2005).
  • Bayden R. Wood, Larissa Hammer and Don McNaughton, Resonance Raman spectroscopy provides evidence of heme ordering within the functional erythrocyte Vibrational Spectroscopy, 38, 71-78  2005.
  • Crombie DE, Turer,M, Biurrun Zuasta, B, Wood,B, McNaughton, D, Nandakumar, KS, Holmdahl, R, Van Damme, MP, Rowley, MJ Destructive effects of murine arthritogenic antibodies to type II collagen on cartilage explants in vitro Arthritis Research & Therapy 2005, 7:R927-R937 (2005).
  • Don McNaughton, Janelle Lim, Steve Langford, Jocelyn Collie and Bayden Wood, Raman spectroscopy and imaging of whole functional cells Biomedical Applications of Micro- and Nanoengineering II, Editor: Dan V. Nicolau, Swinburne Univ. of Technology (Australia) Proceedings of SPIE Vol. 5651, 52-60 (2005)
  • B. R. Wood, K. R. Bambery, L.M. Miller, M. Quinn, L. Chiriboga M. Diem, and D. McNaughton, Infrared Imaging of normal diseased cervical tissue sections, Biomedical Applications of Micro- and Nanoengineering II, Editor: Dan V. Nicolau, Swinburne Univ. of Technology (Australia) Proceedings of SPIE Vol. 5651, 78-84 (2005)
  • D. E Crombie, IR Mackay, BR Wood, D McNaughton, MJ Rowley,Liver histopathology: imaging by Fourier transform infrared micro-spectroscopy for objective and quantifiable assessment Journal of gastroenterology and hepatology 20,485 (2005).
  • Raman microspectroscopy and Imaging reveals insights into hemoglobin denaturation and aggregation within human erythrocytes, Bayden R. Wood, Larissa Hammer, Lara I. Davis, and Don McNaughton J. Biomed. Opt. 10 (1), 14005 (2005)
  • B. Mohlenhoff, M. Romeo, M. Diem and B. R. Wood “Scattering and non-Beer-Lambert Absorption Behavior of Human Cells in Infrared Micro-Spectroscopy” Biophys. J. 88(5),  3635-3640 (2005).
  • B.R. Wood and D. McNaughton, “Resonant Raman studies on functional erythrocytes” Chapter in "Sickle Cell Disease Research." Nova scientific Publishers 2005
  • B. R. Wood and D. McNaughton, FPA imaging and spectroscopy for monitoring chemical changes in tissue, in “Spectrochemical Analyses Using Multichannel Infrared Detectors”, ed. R. Bhargave and I. Levin, Blackwell 2005
  • Synchrotron Infrared Spectroscopy in Biology and Biomedicine, D. McNaughton, Australian Biochemist, 36(1), 55-58 (2005)
  • Gas phase conformation in the ibuprofen analogues isobutylbenzene and 2-phenylpropionic acid. Robertson, E. G.; Morrison, R. J. S.   Molecular Physics  103(11-12),  1625-1632. (2005)
  • Effects of pre-processing of Raman spectraon in vivo classification of nutrient status of microalgal cells , P.Heraud, J.Beardall, B.R. Wood and D. McNaughton., J. Chemometrics 20, 1-5 (2006)
  • Bayden R. Wood and Don McNaughton Resonance Raman Spectroscopy in malaria research, Expert Reviews on Proteomics ISSN: 1478-9450, 3 (5), 525-544 (2006).
  • A Three-Dimensional Multivariate Image Processing Technique for the Analysis of FTIR Spectroscopic Images of Multiple Tissue Sections , Bayden R. Wood, Keith R. Bambery, Corey J. Evans, Michael Quinn and Don McNaughton, BMC Medical Imaging 2006, 6:12 (3 October 2006).
  • T. J. Egan, J. Y-J. Chen,  K. A. de Villiers, T. E. Mabotha, K. J. Naidoo, K. K. Ncokazi, S. J. Langford, D. McNaughton, S.Pandiancherri, B, R. Wood, Haemozoin (b-haematin) biomineralization occurs by self-assembly near the lipid/water interface FEBS Letters  (2006),  580(21),  5105-5110.
  • A Fourier transform infrared microspectroscopic imaging investigation into an animal model exhibiting glioblastoma multiforme : Keith R Bambery, Elisabeth Schultke; Bayden Robert Wood, Sarah T Rigley, Khalid Ataelmannan, Robert W. Griebel, Bernhard H. J. Juurlink, Don McNaughton. Biochimica et Biophysica Acta, Biomembranes  (2006),  1758(7),  900-907.
  • M. Berman, A. Phatak, R. Lagerstrom and B.R. Wood, ICE: A new method for the multivariate curve resolution of hyperspectral images, J. Chemometrics, 20(5), 193-197, (2006).
  • T. Itoh, K. Hashimoto, V. Biju, M. Ishikawa, B.R. Wood, Y. Ozaki, Elucidation of interaction between metal-free tetraphenylporphine and surface Ag atoms through temporal fluctuations of surface enhanced Raman scattering and background emission, J. Phys. Chem B. 110, 9579-9585 (2006).
  • B.R. Wood and D. McNaughton, “Resonant Raman studies on functional erythrocytes” in "New Developments in Sickle Cell Disease Research." Ed. P.D. O’Malley, p. 65-119. Nova science Publishers, Inc, New York 2006 ISBN: 1-59454-792-0
  • Characterising nutrient-induced fluorescence transients (NIFTs) in nitrogen-stressed Chlorella emersonii (Chlorophyta) Kirsten Shelly, Tara Higgins, John Beardall, Bayden Wood , Don McNaughton, Philip Heraud . Phycologia 46, 503-512 (2007).
  • In vivo prediction of nutrient status of individual microalgal cells using Raman microspectroscopy, Heraud, Philip; Beardall, John; McNaughton, Donald; Wood, Bayden, FEMS Microbiology Lett (2007),  275(1),  24-30. 
  • Raman acoustic levitation spectroscopy of red blood cells and Plasmodium falciparum trophozoites      Ljiljana Puskar, Rudolf Tuckermann, Torsten Frosch, Jürgen Popp, Vanalysa Ly, Don McNaughton, and Bayden R. Wood Lab on a Chip  2007, 7, 1125 – 1131
  • M.Kansiz, Ana Domínguez-Vidal, Don McNaughton and B. Lendl, Fourier Transform Infrared (FTIR) Spectroscopy for Monitoring and Determining the Crystallisation of Polyhydroxyalkanoates (PHAs) Analytical and Bioanalytical chemistry 388, 1207 -1213 (2007)
  • FTIR Investigation of Spray-Dried Milk Protein Concentrate Powders  Ashwini Kher, Punsandani Udabage, Ian McKinnon, Don McNaughton, Mary Ann Augustin,  Vibrational spectroscopy 44(2),  375-381(2007)
  • Fourier transform infrared imaging as a method for detection of HLA class I expression in melanoma without the use of antibody. Sock Fern Chew , Bayden R. Wood , Carmel Kanaan , Judy Browning, Duncan MacGregor, Ian D. Davis, Jonathan Cebon, Brian D. Tai , Donald McNaughton, Tissue Antigens 69 Suppl 1 252-8. (2007)
  • Crystal Nucleation, Growth and Morphology of the Synthetic Malaria Pigment b-Hematin and the Effect Thereon by Quinoline Additives: The Malaria Pigment as a Target of Various Antimalarial Drugs., Inna Solomonov, Maria Osipova, Ishay Feldman, Carsten Baehtz, Kristian Kjaer, Ian K. Robinson, Grant T. Webster, Don McNaughton, Bayden R. Wood, Isabelle Weissbuch, Leslie Leiserowitz. JACS. 129, 2615-2657 (2007)
  • Monitoring the dynamical R to T state transition in functional erythrocytes with Resonance Raman spectroscopy using 785 nm laser excitation, Bayden R. Wood, Peter Caspers, Don McNaughton and Gerwin Puppels  Anal&Bioanl Chem , 387, 1691-1703 (2007)
  • Focal plane array infrared imaging: a new way to analyse leaf tissue, Philip Heraud, Sally Caine, Gordon Sanson, Ros Gleadow, Bayden R. Wood and Don McNaughton, New Phytologist,173, 216-225 (2007).
  • Don McNaughton Synchrotron Infrared Spectroscopy of Biomolecules, Chemistry in Australia, p20-25, Sep 2007
  • D. McNaughton and B.R. Wood, “Applications of FTIR imaging in cancer research,” Chpt 2 in New Approaches in Biomedical Spectroscopy K. Kneipp, R. Aroca, H. Kneipp, E. Wentrup-Byrne (Eds) ACS Symposium Book Series Vol. 963 , 14-29, 2007 ISBN 978-0-8412-7437-2
  • P.R. Heraud, B.R. Wood, J. Beardall and D. McNaughton, “Probing the influence of the environment on microalgae using infrared and Raman spectroscopy”, Chpt 7 in New Approaches in Biomedical Spectroscopy K. Kneipp, R. Aroca, H. Kneipp, E. Wentrup-Byrne (Eds) ACS Symposium Book Series Vol. 963, 85-106, 2007 ISBN 978-0-8412-7437-2.
  • Shedding New Light on the Molecular Architecture of Oocytes Using a Combination of Synchrotron Fourier Transform-Infrared and Raman Spectroscopic Mapping.,Bayden R. Wood Tatyana Chenenko, Uditha Bernhard, Cassandra Jayne, Alison Bramble, Mark Tobin , Max Diem, Alan O. Trounson, Don McNaughton Orly Lacham-Kaplan Anal Chem 80(23),  9065-9072 2008
  • Surface-Enhanced Raman Scattering Spectroscopy of Resveratrol, Jitraporn Vongsvivut, Evan G. Robertson and Don McNaughton, Aust J Chem. 61,921-929, 2008.
  • Inter-colonial variability in macromolecular composition in P-starved and P-replete Scenedesmus populations revealed by infrared microspectroscopy Philip Heraud, Slobodanka Stojkovic, John Beardall, Don McNaughton and Bayden R. Wood., J. Phycology 44, 1335-1339 (2008)
  • Determination of the secondary structure of proteins in different environments by PLS method in ATR-FTIR, Yeqiu WANG, Reinhard I. BOYSEN, Bayden R. WOOD, Mustafa KANSIZ, Don McNAUGHTON and Milton T. W. HEARN Biopolymers 89(11),  895-905 2008
  • Fourier transform infrared and small angle X-ray scattering as a combined biomolecular approach to diagnosis of breast cancer, Geraldine Ooi, Jane Fox, Karen Siu, Rob Lewis, Keith Bambery, Don McNaughton and Bayden Wood, Medical Physics 35(5) 2151-2161, 2008
  • Resonance Raman and chemometrics investigation of the binding of anti-malarial drugs to haemozoin (malaria pigment) in infected erythrocytes, Grant T. Webster, Leann Tilley, Samantha Deed, Don McNaughton and Bayden R. Wood FEBS letters 582, 1087-1092, 2008
  • Chiovitti, A., Heraud, P., Dugdale, T.M., Hodson, O.M., Curtain, R.C.A., Dagastine, R.R., Wood, B.R., Wetherbee, R. Divalent cations stabilize the aggregation of sulfated glycoproteins in the adhesive nanofibers of the biofouling diatom Toxarium undulatum (2008) Soft Matter, 4 (4), pp. 811-820.
  • Berman, M., Phatak, A., Lagerstrom, R., Wood, B.R. ICE: a new method for the multivariate curve resolution of hyperspectral images (2008), J. Chemometrics, 22, pp. 722-737.
  • B.R. Wood and D. McNaughton, “Resonant Raman scattering of heme molecules in cells and  in the solid state”, in Biomedical Vibrational Spectroscopy, Eds. J. Kneipp and P. Lasch, p. 181-208, John Wiley and sons 2008 ISBN: 978-0-470-22945-3.
  • Wood, B. R. McNaughton D. “Resonance Raman Spectroscopy of Erythrocytes” in Vibrational Spectroscopy for Medical Diagnosis p 261-310 ed. M. Diem, J.M. Chalmers and P.R. Griffiths (2008), Wiley , UK ISBN-978-0470-01214-7
  • McNaughton, D., Bambery, K and Wood, B. R. “Spectral Histo-pathology of the human cervix” in Vibrational Spectroscopy for Medical Diagnosis p 187-202 ed. M. Diem, J.M. Chalmers and P.R. Griffiths (2008), Wiley , UK ISBN-978-0470-01214-7
  • Use of FTIR and Mass Spectrometry for Characterisation of Glycated Caseins , Christine M Oliver, Ashwini Kher, Don McNaughton and Mary Ann Augustin J. Dairy Research 76, 1050-110 (2009).
  • Glycation of deamidated wheat proteins with different MW maltodextrins, Benjamin Wong, Li Day, Donald McNaughton, and Maryann Augustin, Food Biophysics, 4, 1-12 (2009)
  • Aggregated Enhanced Raman Scattering in Fe(III)PPIX solutions : The effects of concentration and chloroquine on excitonic interactions., Grant T. Webster, Don McNaughton and Bayden R. Wood* J phys chem. B113(19) 6910-6916 2009
  • Resonance Raman microscopy in combination with partial dark-field microscopy lights up a new path in malaria diagnosis, Bayden R. Wood, Antje Hermelink, Peter Lasch, Keith. R. Bambery, Grant T. Webster, Mehdi Asghari Khiavi, Brian Cooke, Samantha Deed, Dieter Naumann and Don McNaughton, Analyst, 134, 1119 – 1125 2009.
  • ICE: a new method for the multivariate curve resolution of hyperspectral images M. Berman, A Phatak , R. Lagerstrom and BR Wood, J Chemometrics 101-116, 2009
  • Impact of fixation on in vitro cell culture lines monitored with Raman spectroscopy MM Mariani, P. Lampen , J. Popp, V. Deckerta and BR Wood  Analyst, 134, 1164 – 1161 2009
  • A Vibrational Spectroscopic Investigation into the Effects of Fixation and Dehydration on Hemoglobin inside Erythrocytes, M. Asghari-Khiavi, A. Mechler, K.R. Bambery, D. McNaughton, and B.R. Wood J Raman Spec Published Online: May 11 2009 DOI: 10.1002/jrs.2317
  • Synchrotron infrared micro-spectroscopy can detect specific lipid and hemozoin marker bands in fixed single malaria infected cells at different stages of the intra-erythrocytic life cycle Grant T. Webster, Katherine de Villiers, Timothy J Egan, Samantha Deed, Leann Tilley,  Mark Tobin, Don McNaughton and Bayden R. Wood Anal chem. 80, 9065-9072, 2009
  • Chemical Analysis by Raman spectroscopy on acoustically levitated drops, Rudolf Tuckermann, Ljiljana Puskar, M. Zavabeti, R. Sekine and Don McNaughton Anal&Bioanal Chem  394, 1433 – 1441, 2009.